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Ocean models

The simulator is a demonstrating/teaching tool that allows the non-modellers to run and compare the default output of biogeochemical models, as well as design custom 1D simulations. The prototype runs only PISCES and ERSEM-PELAGOS, and is developed by the European Network of Excellence EUROCEANS and DIATEAM.

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How to use

Users can run the default biogechemical model setup (see ‘Docs’ for default setup details), or design their own simulation by varying phytoplankton, zooplankton and organic matter variable values within accepted ranges. Chosen output variables can be visualized in time-series, and vertical profile format, or downloaded for further analysis.

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Default Run the model(s) as parametrized by the developer(s)
Custom Change the value of the state variables as required

Choose your models

Experiment with a single model or compare output from two biogeochemical models, either with their default parameter values or with new user-defined values. All simulations use NEMO-OPA hydrodynamic fields. For full model details, click on ‘Docs’.

More
APECOSM Bioenergetic size-based model for apex predators.
More
ERSEM-PELAGOS Quota biogeochemical model, a global version of ERSEM.
More
NEMURO Monod biogeochemical model developed for the Pacific Ocean.
More
PISCES Monod, 24 compartment biogeochemical model for marine productivity.

Choose a geographic location

Select a location for the 1D simulation by clicking on the map, or dialing it in. Your choice will be approximated to the grid of the map.

Latitude
 °E
Longitude
 °N
marker

Choose a run period

Select a start and end date for the simulation, or choose a preconfigured period duration. Run period is measure in absolute years.

Select your start date

Day Month Year Index

Select your end date

Day Month Year Index

Or choose preconfigured time interval

Change state variables values

State Variables
Hydrodynamics
Others

Change state variable values for phytoplankton, zooplankton and organic matter within accepted ranges. Food matrix can also be changed from default values only between 0 and 1.

Variables Symbol Values Units
P-I slope nano alpha (W.m-2)-1 d-1
P-I slope diatoms alpha (W.m-2)-1 d-1
Mortality Rate nano mP Day-1
Mortality Rate diatoms mP Day-1
Sedimentation Rate nano w P d-1 molC-1
Sedimentation Rate dia w Pmax d-1 molC-1
K NO3 nano K NO3 mMolN/L
K NO3 diatoms K NO3 mMolN/L
K NH4 nano K NH4 mMolN/L
K NH4 diatoms K NH4 mMolN/L
K Si diatoms K Si mMolSi/L
K Fe min nano K Fe nMolFe/L
K Fe min diatom K Fe nMolFe/L

Change state variable values for phytoplankton, zooplankton and organic matter within accepted ranges. Food matrix can also be changed from default values only between 0 and 1.

Variables Symbol Values Units
Growth efficiency, micro epsilon
Growth efficiency, meso epsilon
Grazing rate, max, micro gZ Day-1
Grazing rate, max, meso gM Day-1
K Grazing, micro K G Z mMolC l-1
K Grazing, meso K G Z mMolC l-1
Microzooplankton excretion rZ Day-1
Mesozooplankton excretion rM Day-1
Microzooplankton mZ (mMolC l-1)-1 d-1
Mesozooplankton mortality mM (mMolC l-1)-1 d-1

Change state variable values for phytoplankton, zooplankton and organic matter within accepted ranges. Food matrix can also be changed from default values only between 0 and 1.

Variables Symbol Values Units
Remineralization rate of DOC Lambda DOC d-1
Half-saturation constant for DOC remineralization K DOC mMolC l-1
Degradation rate of POC Lambda POC d-1
Mininimum sinking speed of POC w min m d-1
Maximum sinking speed of POC w max m d-1
NH4 nitrification rate Lambda NH4 Day-1
Iron scavenging rate Lambda Fe d-1 uMol-1 L

Change state variable values for phytoplankton, zooplankton and organic matter within accepted ranges. Food matrix can also be changed from default values only between 0 and 1.

PREY
PREDATOR Nano phytoplankton Diatoms POS Microzooplankton
Microzooplankton
Mesozooplankton

The simulator uses hydrodynamic output from NEMO-OPA as a default. Other hydrodynamic models output are planned for further development (e.g. ROMS, POM).

More
NEMO-OPA The NEMO/OPA ocean model [Madec et al.1998] with 0.25° horizontal is a ...
More
BERN3D The Bern3D model (Müller. et al., Journal of Climate, 2006) is a computationally-efficient, 3-dimensional ...
More
POM The Princeton Ocean Model (POM; Blumberg and Mellor, 1980 and 1987) ...
More
ROMS The Regional Ocean Model is ...

If you would prefer more freedom on customizing your simulations, let us know. Contact ivo_grigorov@hotmail.com

Choose variables for output

Tick the boxes of the variables you would like to plot graphically after the simulation. As a default you can download all output variables after the simulations has completed.

Indice - Desc Units
DIC - Dissolved Inorganic Carbon uMol/L
Alkalini - Total alkanility uMol/L
O2 - Dissolved oxygen uMol/L
CaCO3 - Calcite uMol/L
PO4 - Phosphate uMol/L
POC - Small particulate organic carbon uMol/L
Si - Silicate uMol/L
PHY - Nanophytoplankton uMol/L
ZOO - Microzooplankton uMol/L
DOC - Semi-labile Dissolved Organic Carbon uMol/L
PHY2 - dissolved oxygen uMol/L
ZOO2 - Mesozooplankton uMol/L
BSi - Silicon content of the diatom uMol/L
Fer - Dissolved iron nMol/L
BFe - Iron in the big particle nMol/L
GOC - Big particulate organic carbon uMol/L
SFe - Iron in the small particles nMol/L
DFe - Iron content of the diatoms nMol/L
DSi - Sinking biogenic silica uMol/L
NFe - Iron content of the nanophytoplankton nMol/L
NCHL - Chlorophyll of the nanophytoplankton mg/m3
DCHL - Chlorophyll of the diatoms mg/m3
NO3 - Nitrate uMol/L
NH4 - Ammonium uMol/L

Run simulation

By clicking here...

Parameters

Map
  • PISCES
  • ERSEM
Map
  • Latitude : 45
  • Longitude : 45
Time
  • Starts on 12/12/12
  • Finishes on 14/12/12
Custom values
  • Enabled
  • 12 customized values
Output
  • Enabled
  • 12 selected indices

Run
  • 12/12/2008From :
  • 12/12/2008To :

Variables

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Models

Observations

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Outputs

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Results

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NETCDF Eco3M is dedicated to biogeochemical modelling.
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© 2008 DIATEAM - www.euroceans-models-simulator.org - GPL: Condition of use - DIATEAM